PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00213.1.g00190.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 308aa    MW: 32806.7 Da    PI: 5.005
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00213.1.g00190.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.21.8e-17167214555
                           AP2   5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   GVr ++ +g+++AeIrd + ng   r+++g+f+t+e Aa a+++a+ +++g
  Zpz_sc00213.1.g00190.1.sm.mk 167 GVRKRP-WGKYAAEIRDSTRNG--ERVWIGTFDTPEAAALAYDQAAYSMRG 214
                                   9*****.**********44465..*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.022164222IPR001471AP2/ERF domain
PRINTSPR003673.0E-7165176IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-21166223IPR016177DNA-binding domain
PfamPF008472.8E-12167214IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-27167223IPR001471AP2/ERF domain
SMARTSM003808.9E-31167228IPR001471AP2/ERF domain
CDDcd000188.64E-15167224No hitNo description
PRINTSPR003673.0E-7188204IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MEPQFGNSLY YGNDAYAHEG QGYSPCSFTC YDETSYSDTM ADTGSYQPSS VCASQQYGGG  60
GYNHQSSSPA AWVSSSSMSS AYSHHHSYQQ QLHFGGGVDE YYGCQVEEAM GAVDMDRVSA  120
LMGAASISTT TTSWTTGHHG EAFAASSSSS AAMDESSGGG DDAPLIGVRK RPWGKYAAEI  180
RDSTRNGERV WIGTFDTPEA AALAYDQAAY SMRGPGAVLN FPVQHVQETL RELGLSGGAA  240
AGDSPVLALK RRHCIRKRSP KTKKASGEEQ TTATSSGHGK QKQSASCVLE LQDLGPEYLE  300
ELLALSYE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-23167224562ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1249263KRRHCIRKRSPKTKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002459509.11e-102hypothetical protein SORBIDRAFT_02g005840
TrEMBLC5XCK51e-102C5XCK5_SORBI; Putative uncharacterized protein Sb02g005840
STRINGSb02g005840.11e-101(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.13e-29ethylene response factor 1